Utils Module
============

The utils module contains utility functions and helpers.

API Client
----------

.. automodule:: specalign.utils.api
   :members:
   :undoc-members:
   :show-inheritance:

File I/O
--------

.. automodule:: specalign.utils.io
   :members:
   :undoc-members:
   :show-inheritance:

Logging
-------

.. automodule:: specalign.utils.logging
   :members:
   :undoc-members:
   :show-inheritance: